SNP Profiles of LF 1 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AC	AG	AA	GG	AG	AA	AA	AA	GG	AG	AA	AA	AA
1._RUQ_17	_	_	_	_	_	_	AA	_	_	_	_	_	_	_
2._LF_1	_	_	_	_	_	CT	AA	_	AA	_	_	_	_	_
3._LF_1	_	_	_	_	_	CT	AA	_	AA	_	_	_	_	_
4._LF_1	_	_	_	_	_	CT	AA	_	AA	_	_	_	_	_
5._LF_1	_	_	_	_	_	CT	AA	_	AA	_	_	_	_	_
6._LF_1	_	_	_	_	_	CT	AA	_	AA	_	_	_	_	_
7._GC-08-285-8-57	AA	AC	AG	AA	CC	CT	AA	TT	AA	CC	AG	TT	TT	TT
8._GC-08-285-8-57	AA	AC	AG	AA	CC	CT	AA	TT	AA	CC	AG	TT	TT	TT
9._GC-08-285-8-57	AA	AC	AG	AA	CC	CT	AA	TT	AA	CC	AG	TT	TT	TT
10._GC-08-285-8-57	AA	AC	AG	AA	CC	CT	AA	TT	AA	CC	AG	TT	TT	TT
11._RUQ_17	_	_	_	_	_	CT	_	TT	_	_	AG	_	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	GG	AG	AA	GG	AA	GG	AA	AA	GG	AC	AG	GG	AA
1._RUQ_17	_	_	_	_	_	_	_	AA	_	_	_	_	_	_
2._LF_1	_	CC	_	AA	_	TT	_	AA	TT	GG	GT	CT	CC	_
3._LF_1	_	CC	_	AA	_	TT	_	AA	TT	GG	GT	CT	CC	_
4._LF_1	_	CC	_	AA	_	TT	_	AA	TT	GG	GT	CT	CC	_
5._LF_1	_	CC	_	AA	_	TT	_	AA	TT	GG	GT	CT	CC	_
6._LF_1	_	CC	_	AA	_	TT	_	AA	TT	GG	GT	CT	CC	_
7._GC-08-285-8-57	CT	CC	TT	AA	GG	TT	CC	AA	TT	GG	GT	CT	CC	TT
8._GC-08-285-8-57	CT	CC	TT	AA	GG	TT	CC	AA	TT	GG	GT	CT	CC	TT
9._GC-08-285-8-57	CT	CC	TT	AA	GG	TT	CC	AA	TT	GG	GT	CT	CC	TT
10._GC-08-285-8-57	CT	CC	TT	AA	GG	TT	CC	AA	TT	GG	GT	CT	CC	TT
11._RUQ_17	_	_	CT	_	_	_	CC	AA	TT	GG	GT	CT	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AG	CC	CC	GG	GG	AA	GG	CC	AT	AA	AA	AG	TT	AG
1._RUQ_17	_	_	_	GG	_	_	_	_	_	_	AA	_	_	_
2._LF_1	_	CC	GG	GG	_	TT	GG	_	_	AA	_	_	TT	_
3._LF_1	_	CC	GG	GG	_	TT	GG	_	_	AA	_	_	TT	_
4._LF_1	_	CC	GG	GG	_	TT	GG	_	_	AA	_	_	TT	_
5._LF_1	_	CC	GG	GG	_	TT	GG	_	_	AA	_	_	TT	_
6._LF_1	_	CC	GG	GG	_	TT	GG	_	_	AA	_	_	TT	_
7._GC-08-285-8-57	AG	CC	GG	GG	GG	TT	GG	GG	AT	AA	AA	AG	TT	CT
8._GC-08-285-8-57	AG	CC	GG	GG	GG	TT	GG	GG	AT	AA	AA	AG	TT	CT
9._GC-08-285-8-57	AG	CC	GG	GG	GG	TT	GG	GG	AT	AA	AA	AG	TT	CT
10._GC-08-285-8-57	AG	CC	GG	GG	GG	TT	GG	GG	AT	AA	AA	AG	TT	CT
11._RUQ_17	AG	CC	GG	GG	_	TT	_	_	_	_	AA	AG	TT	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AG	AA	GG	AT	CC	GG	CC	CC	GG	CC	AA	CC	CC	AA
1._RUQ_17	_	_	_	_	_	_	_	AC	_	_	_	CC	CC	_
2._LF_1	_	_	GG	_	_	_	_	CC	_	GG	_	CC	CC	_
3._LF_1	_	_	GG	_	_	_	_	CC	_	GG	_	CC	CC	_
4._LF_1	_	_	GG	_	_	_	_	CC	_	GG	_	CC	CC	_
5._LF_1	_	_	GG	_	_	_	_	CC	_	GG	_	CC	CC	_
6._LF_1	_	_	GG	_	_	_	_	CC	_	GG	_	CC	CC	_
7._GC-08-285-8-57	AG	AA	GG	AT	GG	_	CC	CC	GG	GG	AA	CC	CC	TT
8._GC-08-285-8-57	AG	AA	GG	AT	GG	_	CC	CC	GG	GG	AA	CC	CC	TT
9._GC-08-285-8-57	AG	AA	GG	AT	GG	_	CC	CC	GG	GG	AA	CC	CC	TT
10._GC-08-285-8-57	AG	AA	GG	AT	GG	_	CC	CC	GG	GG	AA	CC	CC	TT
11._RUQ_17	_	_	_	_	GG	_	_	CC	_	GG	_	-	CC	_

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	AG	AA	AG	AA	AA	AG	AC	CC	AC	AC	CC	AA	GG
1._RUQ_17	CC	_	_	_	TT	AA	_	_	_	_	AC	TT	_	CC
2._LF_1	_	CT	_	_	TT	_	_	_	_	_	_	_	_	CC
3._LF_1	_	CT	_	_	TT	_	_	_	_	_	_	_	_	CC
4._LF_1	_	CT	_	_	TT	_	_	_	_	_	_	_	_	CC
5._LF_1	_	CT	_	_	TT	_	_	_	_	_	_	_	_	CC
6._LF_1	_	CT	_	_	TT	_	_	_	_	_	_	_	_	CC
7._GC-08-285-8-57	CC	CT	AG	GG	TT	AA	CT	GT	GG	GT	AC	GG	AA	CC
8._GC-08-285-8-57	CC	CT	AG	GG	TT	AA	CT	GT	GG	GT	AC	GG	AA	CC
9._GC-08-285-8-57	CC	CT	AG	GG	TT	AA	CT	GT	GG	GT	AC	GG	AA	CC
10._GC-08-285-8-57	CC	CT	AG	GG	TT	AA	CT	GT	GG	GT	AC	GG	AA	CC
11._RUQ_17	-	CT	_	_	TT	AA	CT	_	_	GT	AC	_	_	CC

	71	72	73	74	75	76	77	78	79	80
_Input profile	GG	GG	AG	AC	AA	GG	AA	AA	AG	AG	X_X	X_X	X_X	X_X
1._RUQ_17	_	_	AG	_	_	_	_	_	_	AG	X_X	X_X	X_X	X_X
2._LF_1	CC	_	_	_	TT	GG	_	AA	CT	AG	X_X	X_X	X_X	X_X
3._LF_1	CC	_	_	_	TT	GG	_	AA	CT	AG	X_X	X_X	X_X	X_X
4._LF_1	CC	_	_	_	TT	GG	_	AA	CT	AG	X_X	X_X	X_X	X_X
5._LF_1	CC	_	_	_	TT	GG	_	AA	CT	AG	X_X	X_X	X_X	X_X
6._LF_1	CC	_	_	_	TT	GG	_	AA	CT	AG	X_X	X_X	X_X	X_X
7._GC-08-285-8-57	CC	CC	AG	AC	TT	GG	TT	AA	CT	AG	X_X	X_X	X_X	X_X
8._GC-08-285-8-57	CC	CC	AG	AC	TT	GG	TT	AA	CT	AG	X_X	X_X	X_X	X_X
9._GC-08-285-8-57	CC	CC	AG	AC	TT	GG	TT	AA	CT	AG	X_X	X_X	X_X	X_X
10._GC-08-285-8-57	CC	CC	AG	AC	TT	GG	TT	AA	CT	AG	X_X	X_X	X_X	X_X
11._RUQ_17	-	_	-	AC	_	_	_	_	_	AG	X_X	X_X	X_X	X_X

Input profile: LF_1 RUQ_17

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

1._LF_1 RUQ_17

70 %
15 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

2._LF_1

51.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8857 8

Dapeng Zhang, 2016

3._LF_1

51.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8857 7

Dapeng Zhang, 2016

4._LF_1

51.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8857 4

Dapeng Zhang, 2016

5._LF_1

51.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8857 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._LF_1

51.5 %
33 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0298

Dapeng Zhang, 2016

7._LF_1 GC-08-285-8-57

50.6 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._LF_1 GC-08-285-8-57

50.6 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

9._LF_1 GC-08-285-8-57

50.6 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

10._LF_1 GC-08-285-8-57

50.6 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

11._LF_1 RUQ_17

48.4 %
31 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1270	17	TcSNP1309	18	TcSNP1350	19	TcSNP1383	20	TcSNP1414
21	TcSNP1439	22	TcSNP144	23	TcSNP1442	24	TcSNP1484	25	TcSNP150
26	TcSNP151	27	TcSNP1520	28	TcSNP154	29	TcSNP174	30	TcSNP193
31	TcSNP226	32	TcSNP230	33	TcSNP240	34	TcSNP242	35	TcSNP25
36	TcSNP28	37	TcSNP316	38	TcSNP32	39	TcSNP329	40	TcSNP364
41	TcSNP372	42	TcSNP413	43	TcSNP418	44	TcSNP42	45	TcSNP429
46	TcSNP430	47	TcSNP448	48	TcSNP497	49	TcSNP521	50	TcSNP529
51	TcSNP547	52	TcSNP560	53	TcSNP561	54	TcSNP577	55	TcSNP591
56	TcSNP60	57	TcSNP602	58	TcSNP619	59	TcSNP653	60	TcSNP689
61	TcSNP723	62	TcSNP731	63	TcSNP75	64	TcSNP751	65	TcSNP776
66	TcSNP799	67	TcSNP823	68	TcSNP836	69	TcSNP860	70	TcSNP872
71	TcSNP891	72	TcSNP894	73	TcSNP899	74	TcSNP90	75	TcSNP917
76	TcSNP929	77	TcSNP944	78	TcSNP953	79	TcSNP994	80	TcSNP998